MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-135-P2c

Family name MIR-135 (all species)
Seed AUGGCUU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-135
Paralogues Xla-Mir-135-P2d  Xla-Mir-135-P4 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cja-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Eca-Mir-135-P2  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Hsa-Mir-135-P2  Laf-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmr-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Neu-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pab-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Xtr-Mir-135-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Chordata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 43916937-43916996 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGAUCGAGAUAAAUUCACUGUGGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAUGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAGUCAUCAACUAAGAUG
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Structure
        10           20        30        40        50          
UCCGAUCGAGAUAAAUU---|  UGUG                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUAGAAUCAACUACUGAAAA^  UUA-                -            CUGUAA 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-135-P2c_5p
mirBase accessionMIMAT0046447
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Co-mature sequence

Xla-Mir-135-P2c_3p
mirBase accessionMIMAT0046448
Sequence 
38- AUGUAGGGAUGGAAGCCAUGAA -60
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