| MirGeneDB ID | Pma-Mir-135-o2 |
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| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-135b
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| Paralogues |
Pma-Mir-135-o1
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| Orthologues |
Aca-Mir-135-P2
Ami-Mir-135-P2
Bta-Mir-135-P2
Cfa-Mir-135-P2
Cli-Mir-135-P2
Cmi-Mir-135-P2
Cpi-Mir-135-P2
Cpo-Mir-135-P2
Dno-Mir-135-P2
Dre-Mir-135-P2a
Ete-Mir-135-P2
Gga-Mir-135-P2
Gja-Mir-135-P2
Gmo-Mir-135-P2a
Gmo-Mir-135-P2b
Hsa-Mir-135-P2
Lch-Mir-135-P2
Loc-Mir-135-P2
Mal-Mir-135-P2a
Mal-Mir-135-P2b
Mdo-Mir-135-P2
Mml-Mir-135-P2
Mmu-Mir-135-P2
Mun-Mir-135-P2
Oan-Mir-135-P2
Ocu-Mir-135-P2
Pbv-Mir-135-P2
Rno-Mir-135-P2
Sha-Mir-135-P2
Spt-Mir-135-P2
Sto-Mir-135-P2
Tgu-Mir-135-P2
Tni-Mir-135-P2a
Tni-Mir-135-P2b
Xla-Mir-135-P2c
Xla-Mir-135-P2d
Xtr-Mir-135-P2
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Chordata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046098.1: 7520135-7520200 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAUUCCCUCGGGCCUUCCUCCCCGCGUUGUAUGGCUUUUUAUUCCUACGUGAUCGUAACGCACGCUGAGCCUCAUGUAGGGAGGAAAGCCAUGCAACGACGGGUGGACUUGCAGCAGCGGUGGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCAUUCCCUCGGGCCUUC- UC -| A UCGUAACGC
C CCCG CGUUGUAUGGCUUUUU UUCCUACGUGA \
G GGGC GCAACGUACCGAAAGG AGGGAUGUACU A
GCGGUGGCGACGACGUUCA GU A^ - CCGAGUCGC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-135-o2_5p |
| mirBase accession | MIMAT0019465 |
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| Sequence |
0- UAUGGCUUUUUAUUCCUACGUGA -23
Get sequence
|
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| Star sequence |
Pma-Mir-135-o2_3p* |
| mirBase accession | None |
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| Sequence |
44- AUGUAGGGAGGAAAGCCAUGCA -66
Get sequence
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