| MirGeneDB ID | Eca-Mir-135-P2 |
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| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-135a-2
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| Paralogues |
Eca-Mir-135-P1
Eca-Mir-135-P4
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| Orthologues |
Aca-Mir-135-P2
Ami-Mir-135-P2
Bta-Mir-135-P2
Cfa-Mir-135-P2
Cja-Mir-135-P2
Cli-Mir-135-P2
Cmi-Mir-135-P2
Cpi-Mir-135-P2
Cpo-Mir-135-P2
Dno-Mir-135-P2
Dre-Mir-135-P2a
Ete-Mir-135-P2
Gga-Mir-135-P2
Gja-Mir-135-P2
Gmo-Mir-135-P2a
Gmo-Mir-135-P2b
Hsa-Mir-135-P2
Laf-Mir-135-P2
Lch-Mir-135-P2
Loc-Mir-135-P2
Mal-Mir-135-P2a
Mal-Mir-135-P2b
Mdo-Mir-135-P2
Mml-Mir-135-P2
Mmr-Mir-135-P2
Mmu-Mir-135-P2
Mun-Mir-135-P2
Neu-Mir-135-P2
Oan-Mir-135-P2
Ocu-Mir-135-P2
Pab-Mir-135-P2
Pbv-Mir-135-P2
Pma-Mir-135-o2
Rno-Mir-135-P2
Sha-Mir-135-P2
Spt-Mir-135-P2
Sto-Mir-135-P2
Tgu-Mir-135-P2
Tni-Mir-135-P2a
Tni-Mir-135-P2b
Xla-Mir-135-P2c
Xla-Mir-135-P2d
Xtr-Mir-135-P2
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Chordata
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009175.1: 23312821-23312880 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCGACCAAGAUAAAUUCACUCUAGUGCUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUAAGAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCCGACCAAGAUAAAUU---| UCUA C U UAGUAA
CAC GUG UUUAUGGCUUUU AUUCCUAUGUGA \
GUG CAU AAGUACCGAAGG UAGGGAUGUACU U
GAAGAAUCAACUACUAAAAA^ UUA- A - CUGAAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-135-P2_5p |
| mirBase accession | MIMAT0013078 |
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| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
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| Star sequence |
Eca-Mir-135-P2_3p* |
| mirBase accession | None |
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| Sequence |
38- AUGUAGGGAUGGAAGCCAUGAA -60
Get sequence
|
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