MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-135-P2

Family name MIR-135 (all species)
Seed AUGGCUU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-135-P1  Gja-Mir-135-P4 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cja-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Eca-Mir-135-P2  Ete-Mir-135-P2  Gga-Mir-135-P2  Gmo-Mir-135-P2a  Gmo-Mir-135-P2b  Hsa-Mir-135-P2  Laf-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mal-Mir-135-P2b  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmr-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Neu-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pab-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Tni-Mir-135-P2b  Xla-Mir-135-P2c  Xla-Mir-135-P2d  Xtr-Mir-135-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015161984.1: 364369-364428 [+]
Precursor
(pre-Mir +30nt flank)
UCUGAUCAAGAUAAAUUCACUUUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUAAGAUG
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Structure
        10           20        30        40        50          
UCUGAUCAAGAUAAAUU---|  UUUA                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUAGAAUCAACUACUAAAAA^  UUA-                -            CUGAAA 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-135-P2_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Gja-Mir-135-P2_3p*
mirBase accessionNone
Sequence 
38- AUGUAGGGAUGGAAGCCAUGAA -60
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