Mir-135-P2b

MirGeneDB ID

Tni-Mir-135-P2b

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-135-P1 Tni-Mir-135-P2a Tni-Mir-135-P4a Tni-Mir-135-P4b

Orthologues

Aca-Mir-135-P2 Ami-Mir-135-P2 Bta-Mir-135-P2 Cfa-Mir-135-P2 Cja-Mir-135-P2 Cli-Mir-135-P2 Cmi-Mir-135-P2 Cpi-Mir-135-P2 Cpo-Mir-135-P2 Dno-Mir-135-P2 Eca-Mir-135-P2 Ete-Mir-135-P2 Gga-Mir-135-P2 Gja-Mir-135-P2 Gmo-Mir-135-P2b Hsa-Mir-135-P2 Laf-Mir-135-P2 Lch-Mir-135-P2 Loc-Mir-135-P2 Mal-Mir-135-P2b Mdo-Mir-135-P2 Mml-Mir-135-P2 Mmr-Mir-135-P2 Mmu-Mir-135-P2 Mun-Mir-135-P2 Neu-Mir-135-P2 Oan-Mir-135-P2 Ocu-Mir-135-P2 Pab-Mir-135-P2 Pbv-Mir-135-P2 Pma-Mir-135-o2 Rno-Mir-135-P2 Sha-Mir-135-P2 Spt-Mir-135-P2 Sto-Mir-135-P2 Tgu-Mir-135-P2 Xtr-Mir-135-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Chordata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

19: 3913178-3913236 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUUCCCACUGCGAGAUUGCUGUUGUGUCUUAUGGCUUUUUAUUCCUACGUGAUGGUAGAUGGGUUCAUGUAGGAGUAGAAGCCACUAAACACGCGGUGAGAGUUCACCAGUCCACGGA

Get precursor sequence

Structure

        10           20        30         40        50         
CCUUCCCACUGCGAGAUU---|    U    C   -        U            UGGUA 
                     GCUGU GUGU UUA UGGCUUUU AUUCCUACGUGA     G
                     UGGCG CACA AAU ACCGAAGA UGAGGAUGUACU     A
AGGCACCUGACCACUUGAGAG^    -    -   C        -            UGGGU 
       110       100         90         80         70        60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-135-P2b_5p

mirBase accession

None

Sequence

0- UAUGGCUUUUUAUUCCUACGUGA -23

Get sequence

Co-mature sequence

Tni-Mir-135-P2b_3p

mirBase accession

None

Sequence

37- AUGUAGGAGUAGAAGCCACUAA -59

Get sequence