Mir-135-P1

MirGeneDB ID

Tni-Mir-135-P1

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-135b

Paralogues

Tni-Mir-135-P2a Tni-Mir-135-P2b Tni-Mir-135-P4a Tni-Mir-135-P4b

Orthologues

Aca-Mir-135-P1 Ami-Mir-135-P1 Bta-Mir-135-P1 Cfa-Mir-135-P1 Cja-Mir-135-P1 Cli-Mir-135-P1 Cmi-Mir-135-P1 Cpi-Mir-135-P1 Cpo-Mir-135-P1 Dno-Mir-135-P1 Dre-Mir-135-P1 Eca-Mir-135-P1 Ete-Mir-135-P1 Gga-Mir-135-P1 Gja-Mir-135-P1 Gmo-Mir-135-P1 Hsa-Mir-135-P1 Laf-Mir-135-P1 Lch-Mir-135-P1 Loc-Mir-135-P1 Mal-Mir-135-P1 Mml-Mir-135-P1 Mmr-Mir-135-P1 Mmu-Mir-135-P1 Mun-Mir-135-P1 Oan-Mir-135-P1 Ocu-Mir-135-P1 Pab-Mir-135-P1 Pbv-Mir-135-P1 Pma-Mir-135-o1 Rno-Mir-135-P1 Spt-Mir-135-P1 Sto-Mir-135-P1 Tgu-Mir-135-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

9: 635490-635549 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUCCAGUCUUCCCAAUGCCCAGUGCGCUGUAUGGCUUUUUAUUCCUAUCUGACUGUACUGAGAGUUCAUAUAGGGAUGGAAGCCAUGCACCGCGCUGGGAGCACAGCGCACUGGACCAU

Get precursor sequence

Structure

        10          20        30        40        50          
AAUCCAGUCUUCCCAAUG--|        C            U        C   CUGUAC 
                    CCCAGUGCG UGUAUGGCUUUU AUUCCUAU UGA      \
                    GGGUCGCGC ACGUACCGAAGG UAGGGAUA ACU      U
UACCAGGUCACGCGACACGA^        C            -        U   UGAGAG 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-135-P1_5p

mirBase accession

MIMAT0003031

Sequence

0- UAUGGCUUUUUAUUCCUAUCUGA -23

Get sequence

Star sequence

Tni-Mir-135-P1_3p*

mirBase accession

None

Sequence

38- AUAUAGGGAUGGAAGCCAUGCA -60

Get sequence