MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-135a-1
Paralogues Cfa-Mir-135-P2  Cfa-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cja-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Eca-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(canFam3_add)		 chr20: 37461833-37461892 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-135-P1)		 Mir-135-P1 chr20: 37461833-37461892 [+] UCSC Ensembl
Let-7-P2c3 chr20: 37501074-37501151 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGAGCAGCCCCAGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUUUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGUACGGCGGGGGCGGCCAACGGAGGGCUUG
Get precursor sequence
Structure
        10          20        30        40        50          
GCAGGAGCAGCCCCAGG--|        UCU          UU            UUUUAC 
                   CCUCGCUGU   CUAUGGCUUU  AUUCCUAUGUGA      \
                   GGGGCGGCA   GGUGCCGAGG  UAGGGAUAUACU      U
GUUCGGGAGGCAACCGGCG^        UGC          U-            CACUCG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-135-P1_5p
mirBase accessionMIMAT0010196
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-135a-5p
miRDB: MIMAT0010196
Star sequence

Cfa-Mir-135-P1_3p*
mirBase accessionNone
Sequence 
38- AUAUAGGGAUUGGAGCCGUGGC -60
Get sequence