| MirGeneDB ID | Rno-Mir-135-P1 |
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| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
Norway rat (Rattus norvegicus) |
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| MiRBase ID |
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| Paralogues |
Rno-Mir-135-P2
Rno-Mir-135-P4
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| Orthologues |
Aca-Mir-135-P1
Ami-Mir-135-P1
Bta-Mir-135-P1
Cfa-Mir-135-P1
Cja-Mir-135-P1
Cli-Mir-135-P1
Cmi-Mir-135-P1
Cpi-Mir-135-P1
Cpo-Mir-135-P1
Dno-Mir-135-P1
Dre-Mir-135-P1
Eca-Mir-135-P1
Ete-Mir-135-P1
Gga-Mir-135-P1
Gja-Mir-135-P1
Gmo-Mir-135-P1
Hsa-Mir-135-P1
Laf-Mir-135-P1
Lch-Mir-135-P1
Loc-Mir-135-P1
Mal-Mir-135-P1
Mml-Mir-135-P1
Mmr-Mir-135-P1
Mmu-Mir-135-P1
Mun-Mir-135-P1
Oan-Mir-135-P1
Ocu-Mir-135-P1
Pab-Mir-135-P1
Pbv-Mir-135-P1
Pma-Mir-135-o1
Spt-Mir-135-P1
Sto-Mir-135-P1
Tgu-Mir-135-P1
Tni-Mir-135-P1
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Chordata
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Genome context
(rn6) |
chr8: 114847396-114847455 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAGGGACCGCCCCAGUCCUCACUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUACUAUUGCUCGCUCAUAUAGGGAUUGGAGCCGUGGCGCACGGUGAGGGUAGCCAACAGAGGGCUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCAGGGACCGCCCCAGU--| UCU UU UACUAU
CCUCACUGU CUAUGGCUUU AUUCCUAUGUGA \
GGAGUGGCA GGUGCCGAGG UAGGGAUAUACU U
UCUCGGGAGACAACCGAUG^ CGC U- CGCUCG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Because there is only a single read of the 3p arm the Group 2 status of this gene cannot be reliably assessed. |
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Dr |
Dr |
Ad |
Bi |
Bi |
Bi |
Bi |
Br |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Du |
Du |
Du |
Du |
Fa |
He |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Ki |
La |
Li |
Li |
Li |
Li |
Li |
Li |
Lu |
Me |
Me |
Mu |
Ov |
Pa |
Pa |
Pa |
Sk |
Sm |
So |
So |
So |
So |
Sp |
St |
St |
St |
St |
Te |
Te |
Th |
Ut |
Wh |
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| Mature sequence |
Rno-Mir-135-P1_5p |
| mirBase accession | None |
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| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
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| Star sequence |
Rno-Mir-135-P1_3p* |
| mirBase accession | None |
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| Sequence |
38- AUAUAGGGAUUGGAGCCGUGGC -60
Get sequence
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