MirGeneDB 2.1

MirGeneDB ID

Gga-Mir-135-P2

Family name MIR-135 (all species)
Seed AUGGCUU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-135a-2
Paralogues Gga-Mir-135-P1  Gga-Mir-135-P4 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Ete-Mir-135-P2  Gja-Mir-135-P2  Gmo-Mir-135-P2a  Gmo-Mir-135-P2b  Hsa-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mal-Mir-135-P2b  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Tni-Mir-135-P2b  Xla-Mir-135-P2c  Xla-Mir-135-P2d  Xtr-Mir-135-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(Gallus_gallus.GRCg6a)
1: 46333921-46333980 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGAUCAAGAUAAAUUCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUCAGAUG
Get precursor sequence
Structure
        10           20        30        40        50          
UCUGAUCAAGAUAAAUU---|  UCUA                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUAGACUCAACUACUAAAAA^  UUA-                -            CUGAAA 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-135-P2_5p

mirBase accessionMIMAT0001099
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-135a-5p
miRDB: MIMAT0001099
Star sequence

Gga-Mir-135-P2_3p*

mirBase accessionMIMAT0026489
Sequence
38- AUGUAGGGAUGGAAGCCAUGAA -60
Get sequence
Proposed targets TargetScanVert: gga-miR-135a-2-3p
miRDB: MIMAT0026489