Mir-135-P2

MirGeneDB ID

Sto-Mir-135-P2

Family name

MIR-135 (all species)

Seed

AUGGCUU

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-135-P1 Sto-Mir-135-P4

Orthologues

Aca-Mir-135-P2 Ami-Mir-135-P2 Bta-Mir-135-P2 Cfa-Mir-135-P2 Cja-Mir-135-P2 Cli-Mir-135-P2 Cmi-Mir-135-P2 Cpi-Mir-135-P2 Cpo-Mir-135-P2 Dno-Mir-135-P2 Dre-Mir-135-P2a Eca-Mir-135-P2 Ete-Mir-135-P2 Gga-Mir-135-P2 Gja-Mir-135-P2 Gmo-Mir-135-P2a Gmo-Mir-135-P2b Hsa-Mir-135-P2 Laf-Mir-135-P2 Lch-Mir-135-P2 Loc-Mir-135-P2 Mal-Mir-135-P2a Mal-Mir-135-P2b Mdo-Mir-135-P2 Mml-Mir-135-P2 Mmr-Mir-135-P2 Mmu-Mir-135-P2 Mun-Mir-135-P2 Neu-Mir-135-P2 Oan-Mir-135-P2 Ocu-Mir-135-P2 Pab-Mir-135-P2 Pbv-Mir-135-P2 Pma-Mir-135-o2 Rno-Mir-135-P2 Sha-Mir-135-P2 Spt-Mir-135-P2 Tgu-Mir-135-P2 Tni-Mir-135-P2a Tni-Mir-135-P2b Xla-Mir-135-P2c Xla-Mir-135-P2d Xtr-Mir-135-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(GCA_003427355_STO_add)

BFAA01010850.1: 79525-79583 [+]

Precursor
(pre-Mir +30nt flank)

GGUAAUGAAGAUAGAUUCACUGUCGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUUGGGAUACAGUGCACAUAGGGAGGGAAGCCAUGGAAUGCUCAGUGACAGACCUCAGGGGAGCCUC

Get precursor sequence

Structure

        10           20        30        40        50         
GGUAAUGAAGAUAGAUU---|    UC                 A          AUUGGG 
                    CACUG  GUGUUUUAUGGCUUUUU UUCCUAUGUG      A
                    GUGAC  CGUAAGGUACCGAAGGG AGGGAUACAC      U
CUCCGAGGGGACUCCAGACA^    U-                 -          GUGACA 
       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Sto-Mir-135-P2_5p

mirBase accession

None

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

Get sequence

Star sequence

Sto-Mir-135-P2_3p*

mirBase accession

None

Sequence

37- ACAUAGGGAGGGAAGCCAUGGA -59

Get sequence