MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-135-3
Paralogues Ami-Mir-135-P1  Ami-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713700.1: 1169636-1169696 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUUAUCCUCCGUAAGCCCUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCCUAACUCAUGUAGGGCUAAAAGCCAUGGGCUACACAGAGGAUGACUCCACCUUCUCAGG
Get precursor sequence
Structure
        10           20        30        40        50        60
CUUAUCCUCCGUAAGCC---|    C                 UAU          UUGCUU 
                    CUCUG UGUGGUCUAUGGCUUUU   UCCUAUGUGA      U
                    GAGAC ACAUCGGGUACCGAAAA   GGGAUGUACU      U
GGACUCUUCCACCUCAGUAG^    -                 UC-          CAAUCC 
 .       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-135-P4_5p
mirBase accessionMIMAT0038149
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Star sequence

Ami-Mir-135-P4_3p*
mirBase accessionMIMAT0038152
Sequence 
39- AUGUAGGGCUAAAAGCCAUGGG -61
Get sequence