MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-135-P1  Ete-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(echTel2)
JH980299: 31757625-31757685 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCUCUGGACCCCCUUGGCUCCGCUGCGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGAUGUUCCAAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCAAGCUUCUGCAGUGCC
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Structure
        10         20         30        40        50        60
CCUCUGGACCCCCUUGG-   -|    CG             CAU          UUGAUG 
                  CUC CGCUG  GCCUAUGGCUUUU   UCCUAUGUGA      U
                  GGG GUGAC  CGGGUACCGAAAA   GGGAUGUACU      U
CCGUGACGUCUUCGAACG   A^    AU             UC-          CAAACC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ete-Mir-135-P4_5p

mirBase accessionNone
Sequence
0- UAUGGCUUUUCAUUCCUAUGUGA -23
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Star sequence

Ete-Mir-135-P4_3p* (predicted)

mirBase accessionNone
Sequence
39- AUGUAGGGCUAAAAGCCAUGGG -61
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