Mir-10-P1c1-v1

MirGeneDB ID

Dre-Mir-10-P1c1-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-10c

Paralogues

Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1c-v1 Aca-Mir-10-P1c-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1c-v1 Ami-Mir-10-P1c-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1c-v1 Bta-Mir-10-P1c-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1c-v1 Cfa-Mir-10-P1c-v2 Cja-Mir-10-P1c-v1 Cja-Mir-10-P1c-v2 Cli-Mir-10-P1c-v1 Cli-Mir-10-P1c-v2 Cmi-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v2 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v2 Cpo-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1c-v1 Dno-Mir-10-P1c-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1c-v1 Eca-Mir-10-P1c-v2 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1c-v1 Ete-Mir-10-P1c-v2 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1c-v2 Gja-Mir-10-P1c-v1 Gja-Mir-10-P1c-v2 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c1-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Laf-Mir-10-P1c-v1 Laf-Mir-10-P1c-v2 Lch-Mir-10-P1c Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1c-v2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c1-v2 Mdo-Mir-10-P1c-v1 Mdo-Mir-10-P1c-v2 Mgi-Mir-10-P1 Mml-Mir-10-P1c-v1 Mml-Mir-10-P1c-v2 Mmr-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v2 Mmu-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v2 Mom-Mir-10-P1 Mun-Mir-10-P1c-v1 Mun-Mir-10-P1c-v2 Neu-Mir-10-P1c-v1 Neu-Mir-10-P1c-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1c-v1 Oan-Mir-10-P1c-v2 Ocu-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v2 Ofu-Mir-10-P1 Pab-Mir-10-P1c-v1 Pab-Mir-10-P1c-v2 Pau-Mir-10-P1 Pbv-Mir-10-P1c-v1 Pbv-Mir-10-P1c-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1c-v1 Rno-Mir-10-P1c-v2 Rph-Mir-10-P1 Sha-Mir-10-P1c-v1 Sha-Mir-10-P1c-v2 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1c Spu-Mir-10-P1 Sto-Mir-10-P1c-v1 Sto-Mir-10-P1c-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1c-v1 Tgu-Mir-10-P1c-v2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1c-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(danRer11)

chr3: 23720666-23720728 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1c1-v1)

Mir-196-P3a chr3: 23673387-23673447 [+] UCSC Ensembl
Mir-10-P1c1-v1 chr3: 23720666-23720728 [+] UCSC Ensembl
Mir-10-P1c1-v2 chr3: 23720667-23720727 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUGUCAAGAAGAAACCUGUCAUCUAUAUAUACCCUGUAGAUCCGGAUUUGUGUAAACAGACGCACAGUCACAAAUUCGUAUCUAGGGGAGUAUGUAGUUGAUGUAUAGGCUACAUUCAACUU

Get precursor sequence

Structure

        10          20        30        40        50        60 
CCUGUCAAGAAGAAACCU--|   U        A    G     C         GUAAACAG 
                    GUCA CUAUAUAU CCCU UAGAU CGGAUUUGU        A
                    UAGU GAUGUAUG GGGG AUCUA GCUUAAACA        C
UUCAACUUACAUCGGAUAUG^   U        A    -     U         CUGACACG 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-10-P1c1-v1_5p

mirBase accession

MIMAT0001770

Sequence

0- UACCCUGUAGAUCCGGAUUUGU -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-10c

Star sequence

Dre-Mir-10-P1c1-v1_3p*

mirBase accession

MIMAT0031935

Sequence

42- AAAUUCGUAUCUAGGGGAGUA -63

Get sequence