Mir-196-P3a

MirGeneDB ID

Dre-Mir-196-P3a

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-196b

Paralogues

Dre-Mir-196-P1a Dre-Mir-196-P1b Dre-Mir-196-P4a Dre-Mir-196-P4b

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmu-Mir-196-P3 Ocu-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr3: 23673387-23673447 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-196-P3a)

Mir-196-P3a chr3: 23673387-23673447 [+] UCSC Ensembl
Mir-10-P1c1-v1 chr3: 23720666-23720728 [+] UCSC Ensembl
Mir-10-P1c1-v2 chr3: 23720667-23720727 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACACGGAGAAAACCAAGCUGGUCUGUGAUUUAGGUAGUUUCAAGUUGUUGGGCUGGACGUUUAAUUUCACAGGAACCUGAAACUGCCUGAAUUGCUCCAGUUAAACGCAACAUUGUCCGUU

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Structure

        10            20        30        40        50          
ACACGGAGAAAACCAAG----|   UCU UG               A   G   -  CUGGAC 
                     CUGG   G  AUUUAGGUAGUUUCA GUU UUG GG      G
                     GACC   C  UAAGUCCGUCAAAGU CAA GAC CU      U
UUGCCUGUUACAACGCAAAUU^   U-- GU               C   G   A  UUAAUU 
 .       110       100          90        80        70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-196-P3a_5p

mirBase accession

MIMAT0001860

Sequence

0- UAGGUAGUUUCAAGUUGUUGGGC -23

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Proposed targets

TargetScanFish: dre-miR-196b

Star sequence

Dre-Mir-196-P3a_3p*

mirBase accession

None

Sequence

38- ACAGGAACCUGAAACUGCCUGAA -61

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