MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-196-P3a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-196b
Paralogues Dre-Mir-196-P1a  Dre-Mir-196-P1b  Dre-Mir-196-P4a  Dre-Mir-196-P4b 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)		 chr3: 23673387-23673447 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-196-P3a)		 Mir-196-P3a chr3: 23673387-23673447 [+] UCSC Ensembl
Mir-10-P1c1-v1 chr3: 23720666-23720728 [+] UCSC Ensembl
Mir-10-P1c1-v2 chr3: 23720667-23720727 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACGGAGAAAACCAAGCUGGUCUGUGAUUUAGGUAGUUUCAAGUUGUUGGGCUGGACGUUUAAUUUCACAGGAACCUGAAACUGCCUGAAUUGCUCCAGUUAAACGCAACAUUGUCCGUU
Get precursor sequence
Structure
        10            20        30        40        50          
ACACGGAGAAAACCAAG----|   UCU UG               A   G   -  CUGGAC 
                     CUGG   G  AUUUAGGUAGUUUCA GUU UUG GG      G
                     GACC   C  UAAGUCCGUCAAAGU CAA GAC CU      U
UUGCCUGUUACAACGCAAAUU^   U-- GU               C   G   A  UUAAUU 
 .       110       100          90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-196-P3a_5p
mirBase accessionMIMAT0001860
Sequence 
0- UAGGUAGUUUCAAGUUGUUGGGC -23
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Proposed targets TargetScanFish: dre-miR-196b
Star sequence

Dre-Mir-196-P3a_3p*
mirBase accessionNone
Sequence 
38- ACAGGAACCUGAAACUGCCUGAA -61
Get sequence