Mir-196-P3a

MirGeneDB ID

Mal-Mir-196-P3a

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-196-P1a Mal-Mir-196-P1b Mal-Mir-196-P4a

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cja-Mir-196-P3 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Eca-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Ocu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884780.1: 181712-181773 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCUGAUUUCAUUCUGGAGUUGUGUGAUGUAGGUAGUUUCAAGUUGUUGGGCUGGAUUGUUAAGAUCACAGGAACCUGAAACUGCCUGAAUCACACCACCUAAAUGCCAACAAACAGCGGA

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Structure

        10           20        30        40        50          
GUGCUGAUUUCAUUCUGGA---| U       G            A   G   GGCUGGAUU 
                      GU GUGUGAU UAGGUAGUUUCA GUU UUG         \
                      CA CACACUA GUCCGUCAAAGU CAA GAC         G
AGGCGACAAACAACCGUAAAUC^ C       A            C   G   ACUAGAAUU 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-196-P3a_5p

mirBase accession

None

Sequence

0- UAGGUAGUUUCAAGUUGUUGGGC -23

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Star sequence

Mal-Mir-196-P3a_3p*

mirBase accession

None

Sequence

40- AGGAACCUGAAACUGCCUGAAU -62

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