MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-196a-1
Paralogues Cfa-Mir-196-P1  Cfa-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(canFam3_add)		 chr9: 24895683-24895742 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGCGUGAACUGGAACUGCUGAGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGAUUUCUGAACACAACAACAUUAAACCACCCGACUCACGGCAGUUACUGCUCCUCGCUUAGCUG
Get precursor sequence
Structure
        10            20        30        40        50         
UGGAGCGUGAACUGGAA----|    GA    A UA   A    C         GGCCUGGA 
                     CUGCU  GUGA U  GGU GUUU AUGUUGUUG        U
                     GACGG  CACU A  CCA CAAA UACAACAAC        U
GUCGAUUCGCUCCUCGUCAUU^    --    C GC   C    U         ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-196-P3_5p
mirBase accessionMIMAT0006662
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-196a
miRDB: MIMAT0006662
Star sequence

Cfa-Mir-196-P3_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAACAACAUUAAACCACCCGAC -60
Get sequence