MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-196-P1  Cja-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 113729898-113729957 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAGCUUGAACUGGAACUGCUGAGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGUUUCUGAACACAACAACAUCAAACCACCCGAUUCACGGCAGUUACUGCUCCUCGCUUAGCUG
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Structure
        10            20        30        40        50         
UAGAGCUUGAACUGGAA----|    GA      UA   A    C         GGCCUGGG 
                     CUGCU  GUGAAU  GGU GUUU AUGUUGUUG        U
                     GACGG  CACUUA  CCA CAAA UACAACAAC        U
GUCGAUUCGCUCCUCGUCAUU^    --      GC   C    C         ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-196-P3_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Cja-Mir-196-P3_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAACAACAUCAAACCACCCGAU -60
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