| MirGeneDB ID | Cja-Mir-196-P3 |
|---|---|
| Family name | MIR-196 (all species) |
| Seed | AGGUAGU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-196-P1 Cja-Mir-196-P4 |
| Orthologues | Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Eca-Mir-196-P3 Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Ocu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 113729898-113729957 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UAGAGCUUGAACUGGAACUGCUGAGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGUUUCUGAACACAACAACAUCAAACCACCCGAUUCACGGCAGUUACUGCUCCUCGCUUAGCUGGet precursor sequence |
| Structure | 10 20 30 40 50 UAGAGCUUGAACUGGAA----| GA UA A C GGCCUGGG CUGCU GUGAAU GGU GUUU AUGUUGUUG U GACGG CACUUA CCA CAAA UACAACAAC U GUCGAUUCGCUCCUCGUCAUU^ -- GC C C ACAAGUCU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-196-P3_5p |
| mirBase accession | None |
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
| Star sequence | Cja-Mir-196-P3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- CAACAACAUCAAACCACCCGAU -60
Get sequence
|
