MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-196a
Paralogues Cpo-Mir-196-P1  Cpo-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(cavPor3)		 scaffold_53: 8623790-8623849 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGGUGCUUGAACUAGGACUGCUGGGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGCUUCUGAAAACAACAACAUCAAACCACCCGAUUCACGGCAGUUAAGGCUCCUGCUUAGCUGG
Get precursor sequence
Structure
        10            20        30        40        50         
UGGUGCUUGAACUAGGA----|    GG      UA   A    C         GGCCUGGG 
                     CUGCU  GUGAAU  GGU GUUU AUGUUGUUG        C
                     GACGG  CACUUA  CCA CAAA UACAACAAC        U
GGUCGAUUCGUCCUCGGAAUU^    --      GC   C    C         AAAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-196-P3_5p
mirBase accessionMIMAT0047078
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
Star sequence

Cpo-Mir-196-P3_3p*
mirBase accessionMIMAT0047079
Sequence 
38- CAACAACAUCAAACCACCCGAU -60
Get sequence