Mir-196-P3

MirGeneDB ID

Eca-Mir-196-P3

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-196a

Paralogues

Eca-Mir-196-P1 Eca-Mir-196-P4

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cja-Mir-196-P3 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Laf-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmr-Mir-196-P3 Mmu-Mir-196-P3 Neu-Mir-196-P3 Ocu-Mir-196-P3 Pab-Mir-196-P3 Pbv-Mir-196-P3 Pma-Mir-196-o3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009158.1: 24755452-24755511 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGCGUGAACUGGAACUGCUGAGUGAGUUAGGUAGUUUCAUGUUGUUGGGCCUGGAUUUCUGAACACAACGACAUUAAACCACCCGACUCACGGCAGUUACUGCUCCUCGCUUAGCUG

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Structure

        10            20        30        40        50         
UGGAGCGUGAACUGGAA----|    GA      UA   A    C         GGCCUGGA 
                     CUGCU  GUGAGU  GGU GUUU AUGUUGUUG        U
                     GACGG  CACUCA  CCA CAAA UACAGCAAC        U
GUCGAUUCGCUCCUCGUCAUU^    --      GC   C    U         ACAAGUCU 
.       110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-196-P3_5p

mirBase accession

MIMAT0013028

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Eca-Mir-196-P3_3p*

mirBase accession

None

Sequence

38- CAACGACAUUAAACCACCCGAC -60

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