MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Horse (Equus caballus)
MiRBase ID eca-mir-196a
Paralogues Eca-Mir-196-P1  Eca-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009158.1: 24755452-24755511 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAGCGUGAACUGGAACUGCUGAGUGAGUUAGGUAGUUUCAUGUUGUUGGGCCUGGAUUUCUGAACACAACGACAUUAAACCACCCGACUCACGGCAGUUACUGCUCCUCGCUUAGCUG
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Structure
        10            20        30        40        50         
UGGAGCGUGAACUGGAA----|    GA      UA   A    C         GGCCUGGA 
                     CUGCU  GUGAGU  GGU GUUU AUGUUGUUG        U
                     GACGG  CACUCA  CCA CAAA UACAGCAAC        U
GUCGAUUCGCUCCUCGUCAUU^    --      GC   C    U         ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-196-P3_5p
mirBase accessionMIMAT0013028
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Eca-Mir-196-P3_3p*
mirBase accessionNone
Sequence 
38- CAACGACAUUAAACCACCCGAC -60
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