MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-196c
Paralogues Aca-Mir-196-P1  Aca-Mir-196-P4 
Orthologues Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Ocu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(anoCar2)
6: 75666553-75666613 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAGAAAUGACCUAGAACUGUUCUGUGGAUUAGGUAGUUUCACGUUGUUGGGAAUUCAUUUUUAACACACAAGAACAUAAAACUACCUGAUUUACUCCAGUUUAUUCGCCUCGACGUUUUA
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Structure
        10            20        30        40        50          
CCAGAAAUGACCUAGAA----|  UUCU                CAC   G   GGAAUUCAU 
                     CUG    GUGGAUUAGGUAGUUU   GUU UUG         \
                     GAC    CAUUUAGUCCAUCAAA   CAA AAC         U
AUUUUGCAGCUCCGCUUAUUU^  CU--                AUA   G   ACACAAUUU 
 .       110       100          90        80        70
Deep sequencing
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CommentThe Dicer cut is +1 relative to most other vertebrates examined.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-196-P3_5p

mirBase accessionMIMAT0021832
Sequence
0- UAGGUAGUUUCACGUUGUUGGGA -23
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Star sequence

Aca-Mir-196-P3_3p*

mirBase accessionMIMAT0021833
Sequence
38- ACAAGAACAUAAAACUACCUGAU -61
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