MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Human (Homo sapiens)
MiRBase ID hsa-mir-196a-1
Paralogues Hsa-Mir-196-P1  Hsa-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Ocu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(hg38)
chr17: 48632494-48632553 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGAGCUUGAAUUGGAACUGCUGAGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGUUUCUGAACACAACAACAUUAAACCACCCGAUUCACGGCAGUUACUGCUCCUUGCUUAGCUG
Get precursor sequence
Structure
        10            20        30        40        50         
UAGAGCUUGAAUUGGAA----|    GA      UA   A    C         GGCCUGGG 
                     CUGCU  GUGAAU  GGU GUUU AUGUUGUUG        U
                     GACGG  CACUUA  CCA CAAA UACAACAAC        U
GUCGAUUCGUUCCUCGUCAUU^    --      GC   C    U         ACAAGUCU 
.       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Mature sequence

Hsa-Mir-196-P3_5p

mirBase accessionMIMAT0000226
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
Proposed targets microrna.org: MIMAT0000226
TargetScanVert: hsa-miR-196a-5p
TargetMiner: hsa-miR-196a-5p
miRDB: MIMAT0000226
Star sequence

Hsa-Mir-196-P3_3p*

mirBase accessionMIMAT0037307
Sequence
38- CAACAACAUUAAACCACCCGAU -60
Get sequence