MirGeneDB ID | Cmi-Mir-196-P3 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-196-P1
Cmi-Mir-196-P4
|
Orthologues |
Aca-Mir-196-P3
Ami-Mir-196-P3
Bta-Mir-196-P3
Cfa-Mir-196-P3
Cin-Mir-196
Cja-Mir-196-P3
Cli-Mir-196-P3
Cpi-Mir-196-P3
Cpo-Mir-196-P3
Dno-Mir-196-P3
Dre-Mir-196-P3a
Eca-Mir-196-P3
Gga-Mir-196-P3
Gja-Mir-196-P3
Hsa-Mir-196-P3
Laf-Mir-196-P3
Lch-Mir-196-P3
Loc-Mir-196-P3
Mal-Mir-196-P3a
Mdo-Mir-196-P3
Mml-Mir-196-P3
Mmr-Mir-196-P3
Mmu-Mir-196-P3
Neu-Mir-196-P3
Ocu-Mir-196-P3
Pab-Mir-196-P3
Pbv-Mir-196-P3
Pma-Mir-196-o3
Rno-Mir-196-P3
Sha-Mir-196-P3
Spt-Mir-196-P3
Sto-Mir-196-P3
Tni-Mir-196-P3a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635976.1: 1249990-1250047 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGCAAGUGAAAUGCAACUGUUGUGUGAUUUAGGUAGUUUCCUGUUGUUGGGCUGCUCUUUGUUCACAGUGACAAGAAACUGCCUGUAUUACUCCAGUUAUUUUCAUCGCAAACUUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGCAAGUGAAAUGCAA----| UUGU U C UG - CUGCU
CUG GUGAU UAGGUAGUUUC UGU UUG GG \
GAC CAUUA GUCCGUCAAAG ACA GAC CU C
UGUUCAAACGCUACUUUUAUU^ CU-- U A GU A UGUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-196-P3_5p |
mirBase accession | None |
Sequence |
0- UAGGUAGUUUCCUGUUGUUGGG -22
Get sequence
|
Star sequence |
Cmi-Mir-196-P3_3p* |
mirBase accession | None |
Sequence |
36- CAGUGACAAGAAACUGCCUGUA -58
Get sequence
|