MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-196-1
Paralogues Cli-Mir-196-P1  Cli-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(colLiv2)		 scaffold265: 1508615-1508674 [+]
Precursor
(pre-Mir +30nt flank)
CCAAGGCUGAACUAGAACUGCUCUGUGAAUUAGGUAGUUUCAUGUUGUUGGGCUUUUAAUUUUAAACACAAGAACAUCAAACUACCUGAUUUACUCCAGUUAUCCUCCUCGCUCUGGUUU
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Structure
        10            20        30        40        50         
CCAAGGCUGAACUAGAA----|  CUCU                C     G   GGCUUUUA 
                     CUG    GUGAAUUAGGUAGUUU AUGUU UUG        A
                     GAC    CAUUUAGUCCAUCAAA UACAA AAC        U
UUUGGUCUCGCUCCUCCUAUU^  CU--                C     G   ACAAAUUU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-196-P3_5p
mirBase accessionMIMAT0038570
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Cli-Mir-196-P3_3p*
mirBase accessionMIMAT0038571
Sequence 
38- CAAGAACAUCAAACUACCUGAU -60
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