MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-196-1
Paralogues Gga-Mir-196-P1  Gga-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gallus_gallus.GRCg6a)		 27: 6183444-6183503 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAAGAAUGAACUAGAACUGCUCUGUGAAUUAGGUAGUUUCAUGUUGUUGGGCUUUAAAUUUUAAACACAAGAACAUCAAACUACCUGAUUUACUCCAGUUAUCCCCCUCGGUGUGCAGC
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Structure
        10            20        30        40        50         
CCAAGAAUGAACUAGAA----|  CUCU                C     G   GGCUUUAA 
                     CUG    GUGAAUUAGGUAGUUU AUGUU UUG        A
                     GAC    CAUUUAGUCCAUCAAA UACAA AAC        U
CGACGUGUGGCUCCCCCUAUU^  CU--                C     G   ACAAAUUU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-196-P3_5p
mirBase accessionMIMAT0001121
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Proposed targets TargetScanVert: gga-miR-196-5p
miRDB: MIMAT0001121
Star sequence

Gga-Mir-196-P3_3p*
mirBase accessionMIMAT0031017
Sequence 
38- CAAGAACAUCAAACUACCUGAU -60
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Proposed targets TargetScanVert: gga-miR-196-1-3p
miRDB: MIMAT0031017