MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-196-P4

Family name MIR-196 (all species)
Seed AGGUAGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-196-3
Paralogues Gga-Mir-196-P1  Gga-Mir-196-P3 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Eca-Mir-196-P4  Ete-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2  Xtr-Mir-196-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gallus_gallus.GRCg6a)		 33: 7592237-7592294 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCCUUUCAUGCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGGCUUUUAGCUCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUAGUCUUCAUCAAGGGCAGC
Get precursor sequence
Structure
        10            20        30        40        50        
CCGCCCCUUUCAUGCAG----|    CU      U          A          AUUGG 
                     CUGAU  GUGGUU AGGUAGUUUC UGUUGUUGGG     C
                     GACUG  CAUUAA UCCGUCAAAG ACAACGGCUC     U
CGACGGGAACUACUUCUGAUU^    --      U          A          GAUUU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-196-P4_5p
mirBase accessionMIMAT0001121
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGGA -23
Get sequence
Proposed targets TargetScanVert: gga-miR-196-5p
miRDB: MIMAT0001121
Star sequence

Gga-Mir-196-P4_3p*
mirBase accessionNone
Sequence 
35- UCGGCAACAAGAAACUGCCUUAA -58
Get sequence