MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-196-P4a1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-196a-1
Paralogues Tni-Mir-196-P1a  Tni-Mir-196-P1b  Tni-Mir-196-P3a  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Xtr-Mir-196-P4 
Node of Origin (locus) T. nigroviridis
Node of Origin (family) Olfactores
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
3: 685144-685202 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-196-P4a1)
Mir-196-P4a1 3: 685144-685202 [-] UCSC Ensembl
Mir-196-P4a2 3: 700487-700545 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCCUUUGCGGGAAGCUGGAGCGUGGUUUAGGUAGUUUCAUGUUGUUGGGGAUGGCUUCCUGGCUCGGCAACAAGAAACUGCCUUGAUUACGUCAGUUCGUCUUCAUCAAGGGCACA
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Structure
        10            20        30        40        50         
ACCUCCUUUGCGGGAAG----|  GA        U          A          GAUGGC 
                     CUG  GCGUGGUU AGGUAGUUUC UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAAG ACAACGGCUC      U
ACACGGGAACUACUUCUGCUU^  --        U          A          GGUCCU 
       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-196-P4a1_5p

mirBase accessionMIMAT0002956
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Tni-Mir-196-P4a1_3p* (predicted)

mirBase accessionNone
Sequence
37- CGGCAACAAGAAACUGCCUUGA -59
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