Mir-196-P4a

MirGeneDB ID

Dre-Mir-196-P4a

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-196a-1

Paralogues

Dre-Mir-196-P1a Dre-Mir-196-P1b Dre-Mir-196-P3a Dre-Mir-196-P4b

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xtr-Mir-196-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr23: 36088111-36088169 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-196-P4a)

Mir-196-P4a chr23: 36088111-36088169 [+] UCSC Ensembl
Mir-10-P1d1-v1 chr23: 36130016-36130078 [+] UCSC Ensembl
Mir-10-P1d1-v2 chr23: 36130017-36130077 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACGCCGUUACGCGCGGCUGGUGCGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGGCUUCCUGGCUCGACAACAAGAAACUGCCUUGAUUACGUCAGUUCGUCUUCAUCAAGGGCGAC

Get precursor sequence

Structure

        10            20        30        40        50         
AACGCCGUUACGCGCGG----|  GU        U          A          AUUGGC 
                     CUG  GCGUGGUU AGGUAGUUUC UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAAG ACAACAGCUC      U
CAGCGGGAACUACUUCUGCUU^  --        U          A          GGUCCU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-196-P4a_5p

mirBase accession

MIMAT0001276

Sequence

0- UAGGUAGUUUCAUGUUGUUGGGA -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-196a

Star sequence

Dre-Mir-196-P4a_3p*

mirBase accession

None

Sequence

36- UCGACAACAAGAAACUGCCUUGA -59

Get sequence