MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-196-P4

Family name MIR-196 (all species)
Seed AGGUAGU
Species Cow (Bos taurus)
MiRBase ID bta-mir-196a-2
Paralogues Bta-Mir-196-P1  Bta-Mir-196-P3 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2  Xtr-Mir-196-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037332.1: 26040804-26040862 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-196-P4)
Mir-615 NC_037332.1: 25998839-25998902 [-] UCSC Ensembl
Mir-196-P4 NC_037332.1: 26040804-26040862 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCUGCUCGCUCAGCUGAUCUGUGGCUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUAUCGUCGAGGGCCCC
Get precursor sequence
Structure
        10            20        30        40        50         
CCGCCCUGCUCGCUCAG----|   UC                  A          AUUGAG 
                     CUGA  UGUGGCUUAGGUAGUUUC UGUUGUUGGG      \
                     GACU  ACAUUGAGUCCGUCAAAG ACAACGGCUC      U
CCCCGGGAGCUGCUAUUGGCU^   --                  A          AAGUUU 
       110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-196-P4_5p

mirBase accessionMIMAT0009255
Sequence
0- UAGGUAGUUUCAUGUUGUUGGGA -23
Get sequence
Proposed targets TargetScanVert: bta-miR-196a
Star sequence

Bta-Mir-196-P4_3p*

mirBase accessionNone
Sequence
36- UCGGCAACAAGAAACUGCCUGAG -59
Get sequence