MirGeneDB ID | Xtr-Mir-196-P4 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-196a
|
Paralogues |
Xtr-Mir-196-P1
|
Orthologues |
Aca-Mir-196-P4
Ami-Mir-196-P4
Bta-Mir-196-P4
Cfa-Mir-196-P4
Cin-Mir-196
Cja-Mir-196-P4
Cli-Mir-196-P4
Cmi-Mir-196-P4
Cpi-Mir-196-P4
Cpo-Mir-196-P4
Dno-Mir-196-P4
Dre-Mir-196-P4a
Dre-Mir-196-P4b
Eca-Mir-196-P4
Ete-Mir-196-P4
Gga-Mir-196-P4
Gja-Mir-196-P4
Gmo-Mir-196-P4a
Hsa-Mir-196-P4
Laf-Mir-196-P4
Lch-Mir-196-P4
Loc-Mir-196-P4
Mal-Mir-196-P4a
Mml-Mir-196-P4
Mmr-Mir-196-P4
Mmu-Mir-196-P4
Mun-Mir-196-P4
Neu-Mir-196-P4
Oan-Mir-196-P4
Ocu-Mir-196-P4
Pab-Mir-196-P4
Rno-Mir-196-P4
Sha-Mir-196-P4
Spt-Mir-196-P4
Tgu-Mir-196-P4
Tni-Mir-196-P4a1
Tni-Mir-196-P4a2
Tni-Mir-196-P4a3
Xla-Mir-196-P4c-v1
Xla-Mir-196-P4c-v2
Xla-Mir-196-P4d-v1
Xla-Mir-196-P4d-v2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (xenTro9_add) |
chr2: 142905384-142905444 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCAUCUUUGUAUCCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGCUUUUUCUUAACGCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUCGUCUUCAUCAAGUGCAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCAUCUUUGUAUCCAG----| CU U A GGAUUGCUU
CUGAU GUGGUU AGGUAGUUUC UGUUGUUG \
GACUG CAUUAA UCCGUCAAAG ACAACGGC U
CAACGUGAACUACUUCUGCUU^ -- U A GCAAUUCUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-196-P4_5p |
mirBase accession | MIMAT0003690 |
Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
Proposed targets |
TargetScanVert: xtr-miR-196a
|
Star sequence |
Xtr-Mir-196-P4_3p* |
mirBase accession | None |
Sequence |
39- CGGCAACAAGAAACUGCCUUAA -61
Get sequence
|