MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-196-P1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-196b
Paralogues Xtr-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(xenTro9_add)
chr6: 32896546-32896604 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUGUUAGAACAGAGCCGCUGUGUGGUUUAGGUAGUUUUAUGUUGUUGGGCAUUCACCUUUCUCUCUACAACAAGAAACUGCCUUAAUUACAUCAGUGGGAAUCAUCACCCAGGUAG
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Structure
        10         20         30        40         50        
CAAGUGUUAGAACAGAG-      -       U          A      U-|  CAUUC 
                  CCGCUG UGUGGUU AGGUAGUUUU UGUUGU  GGG     A
                  GGUGAC ACAUUAA UCCGUCAAAG ACAACA  UCU     C
GAUGGACCCACUACUAAG      U       U          A      UC^  CUUUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-196-P1_5p

mirBase accessionMIMAT0003691
Sequence
0- UAGGUAGUUUUAUGUUGUUGGG -22
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Proposed targets TargetScanVert: xtr-miR-196b
Star sequence

Xtr-Mir-196-P1_3p* (predicted)

mirBase accessionNone
Sequence
37- CUACAACAAGAAACUGCCUUAA -59
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