MirGeneDB 3.0

MirGeneDB ID

Pma-Mir-196-o1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-196a
Paralogues Pma-Mir-196-o2  Pma-Mir-196-o3 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046078.1: 8134714-8134775 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAGUCCCUGCAGCUGGCUGGUCCGUGGUCUAGGUAGUUUCAUGUUGUUGGGGUUUACGCUCCAGAUGUCCGACAGCAGAAAACUGCCCGGACCGCGCCAGCCAAUAACGGCGUAGGCGACC
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Structure
        10            20        30        40        50        60
CGAGUCCCUGCAGCUGG----|   UC       UA        CA          GUUUACG 
                     CUGG  CGUGGUC  GGUAGUUU  UGUUGUUGGG       C
                     GACC  GCGCCAG  CCGUCAAA  ACGACAGCCU       U
CCAGCGGAUGCGGCAAUAACC^   --       GC        AG          GUAGACC 
120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-196-o1_5p

mirBase accessionMIMAT0019502
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Pma-Mir-196-o1_3p* (predicted)

mirBase accessionMIMAT0019503
Sequence
40- CGACAGCAGAAAACUGCCCGGA -62
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