MirGeneDB ID | Cpo-Mir-196-P1 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-196b
|
Paralogues |
Cpo-Mir-196-P3
Cpo-Mir-196-P4
|
Orthologues |
Aca-Mir-196-P1
Ami-Mir-196-P1
Bta-Mir-196-P1
Cfa-Mir-196-P1
Cin-Mir-196
Cja-Mir-196-P1
Cli-Mir-196-P1
Cmi-Mir-196-P1
Cpi-Mir-196-P1
Dno-Mir-196-P1
Dre-Mir-196-P1a
Dre-Mir-196-P1b
Eca-Mir-196-P1
Ete-Mir-196-P1
Gga-Mir-196-P1
Gja-Mir-196-P1
Gmo-Mir-196-P1a
Gmo-Mir-196-P1b
Hsa-Mir-196-P1
Laf-Mir-196-P1
Lch-Mir-196-P1
Loc-Mir-196-P1
Mal-Mir-196-P1a
Mal-Mir-196-P1b
Mdo-Mir-196-P1
Mml-Mir-196-P1
Mmr-Mir-196-P1
Mmu-Mir-196-P1
Mun-Mir-196-P1
Neu-Mir-196-P1
Oan-Mir-196-P1
Ocu-Mir-196-P1
Pab-Mir-196-P1
Pbv-Mir-196-P1
Pma-Mir-196-o1
Rno-Mir-196-P1c
Rno-Mir-196-P1d
Sha-Mir-196-P1
Spt-Mir-196-P1
Sto-Mir-196-P1
Tgu-Mir-196-P1
Tni-Mir-196-P1a
Tni-Mir-196-P1b
Xla-Mir-196-P1e
Xla-Mir-196-P1f
Xtr-Mir-196-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (cavPor3) |
scaffold_44: 3907441-3907498 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CGCGGGCAGCACCAGAACUGGUCGGUGAUUUAGGUAGUUUCCUGUUGUUGGGAUCCACCUUUCUCUCGACAGCACGACACUGCCUUCAUUACUUCAGUUGAAAUCGUCUCCAGGUACC
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCGGGCAGCACCAGAA----| UC UU U C UCCA
CUGG GGUGAU AGGUAGU UC UGUUGUUGGGA C
GACU UCAUUA UCCGUCA AG ACGACAGCUCU C
CCAUGGACCUCUGCUAAAGUU^ -- CU C C CUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-196-P1_5p |
mirBase accession | MIMAT0047082 |
Sequence |
0- UAGGUAGUUUCCUGUUGUUGGGA -23
Get sequence
|
Star sequence |
Cpo-Mir-196-P1_3p* |
mirBase accession | MIMAT0047083 |
Sequence |
35- UCGACAGCACGACACUGCCUUCA -58
Get sequence
|