MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-196-P1a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-196a-2
Paralogues Tni-Mir-196-P1b  Tni-Mir-196-P3a  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 21: 3025758-3025815 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCGAGGCCCGGAUCGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGGUCCAUUUCAAACUCUGCAACAUGAAACUGUCUUAAUUGCCCCAGUUACACACGACGAAUCCAAAU
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Structure
        10            20        30        40        50        
CGCGAGGCCCGGAUCGA----|  UCGA UG   U  GU             U   GUCCA 
                     CUG    G  GUU AG  AGUUUCAUGUUGU GGG     U
                     GAC    C  UAA UC  UCAAAGUACAACG CUC     U
UAAACCUAAGCAGCACACAUU^  CC-- GU   U  UG             U   AAACU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-196-P1a_5p
mirBase accessionMIMAT0002956
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Tni-Mir-196-P1a_3p* (predicted)
mirBase accessionNone
Sequence 
36- CUGCAACAUGAAACUGUCUUAA -58
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