MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-196-P1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-196-P3  Loc-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Lch-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)
LG11: 41141719-41141777 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAACGGCGCUAAGUGGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGCUCCAAUUCGUGUUCCUGCAACACGAAGCUGCCUUAAUCGCCCCAGUUAAAGUCGUCGCAGAUCCGA
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Structure
        10            20        30        40        50         
UAACGGCGCUAAGUGGA----|  UCGA      U          A      U   CUCCAA 
                     CUG    GUGGUU AGGUAGUUUC UGUUGU GGG      \
                     GAC    CGCUAA UCCGUCGAAG ACAACG CCU      U
AGCCUAGACGCUGCUGAAAUU^  CC--      U          C      U   UGUGCU 
       110       100          90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-196-P1_5p

mirBase accessionNone
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Loc-Mir-196-P1_3p*

mirBase accessionNone
Sequence
37- CUGCAACACGAAGCUGCCUUAA -59
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