Mir-196-P1

MirGeneDB ID

Loc-Mir-196-P1

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-196-P3 Loc-Mir-196-P4

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG11: 41141719-41141777 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UAACGGCGCUAAGUGGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGCUCCAAUUCGUGUUCCUGCAACACGAAGCUGCCUUAAUCGCCCCAGUUAAAGUCGUCGCAGAUCCGA

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Structure

        10            20        30        40        50         
UAACGGCGCUAAGUGGA----|  UCGA      U          A      U   CUCCAA 
                     CUG    GUGGUU AGGUAGUUUC UGUUGU GGG      \
                     GAC    CGCUAA UCCGUCGAAG ACAACG CCU      U
AGCCUAGACGCUGCUGAAAUU^  CC--      U          C      U   UGUGCU 
       110       100          90        80        70        60

Deep sequencing

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Comment

There are Dicer cuts +1 and +2 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-196-P1_5p

mirBase accession

None

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Loc-Mir-196-P1_3p*

mirBase accession

None

Sequence

37- CUGCAACACGAAGCUGCCUUAA -59

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