MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-196-P1a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-196-P1b  Mal-Mir-196-P3a  Mal-Mir-196-P4a 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Hsa-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884831.1: 1314516-1314573 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCAGGCCCGGAUCGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGGUCCAUUUCAAUCUCUGCAACAUGAAACUGUCUUAAUUGCCCCAGUUACAUACAUCGCAACCAAAU
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Structure
        10            20        30        40         50        
CUUCAGGCCCGGAUCGA----|  UCGA UG   U  GU             U-   GUCCA 
                     CUG    G  GUU AG  AGUUUCAUGUUGU  GGG     \
                     GAC    C  UAA UC  UCAAAGUACAACG  UCU     U
UAAACCAACGCUACAUACAUU^  CC-- GU   U  UG             UC   AACUU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-196-P1a_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Mal-Mir-196-P1a_3p*
mirBase accessionNone
Sequence 
36- CUGCAACAUGAAACUGUCUUAA -58
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