Mir-196-P1b

MirGeneDB ID

Mal-Mir-196-P1b

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-196-P1a Mal-Mir-196-P3a Mal-Mir-196-P4a

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1b Xtr-Mir-196-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884815.1: 2846296-2846353 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGAAGAGGAGAGCGGGCUGUUGAGUGGUUUAGGUAGUCUCAUGUUGUUGGGCUUUAUUAUUUUUCCCACAACACGAAACUGCCUUGAUUACCUCAGUAAAACUCGUCGCAUCAUGAA

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Structure

        10        20          30        40        50        
CUGAAGAGGAGAGCGGGCUG-    -|     U       C  A      U   CUUUA 
                     UUGA GUGGUU AGGUAGU UC UGUUGU GGG     U
                     GACU CAUUAG UCCGUCA AG ACAACA CCU     U
AAGUACUACGCUGCUCAAAAU    C^     U       A  C      C   UUUUA 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-196-P1b_5p

mirBase accession

None

Sequence

0- UAGGUAGUCUCAUGUUGUUGGG -22

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Star sequence

Mal-Mir-196-P1b_3p*

mirBase accession

None

Sequence

36- CCACAACACGAAACUGCCUUGA -58

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