MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-196-P1b

Family name MIR-196 (all species)
Seed AGGUAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-196-P1a  Tni-Mir-196-P3a  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 8: 6797449-6797506 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAUAGGAGAGUGAGCUGUUGUGUGGUUUAGGUAGUCUCAUGUUGUUGGGUUCUAAUAUUUCUCCCACAACAGGAAACUGCCUUGAUUACCUCAGUAAAAAUCAUCGCAACAUGAA
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Structure
        10            20        30        40        50         
UUGAAUAGGAGAGUGAG----|  UUGU      U       C  A      U   UUCUAA 
                     CUG    GUGGUU AGGUAGU UC UGUUGU GGG      \
                     GAC    CAUUAG UCCGUCA AG ACAACA CCC      U
AAGUACAACGCUACUAAAAAU^  UC--      U       A  G      -   UCUUUA 
      110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-196-P1b_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUCUCAUGUUGUUGGGU -23
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Star sequence

Tni-Mir-196-P1b_3p*
mirBase accessionNone
Sequence 
36- CCACAACAGGAAACUGCCUUGA -58
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