MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-196-P1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-196-P3  Gja-Mir-196-P4 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015170898.1: 1224278-1224340 [-]
Precursor
(pre-Mir +30nt flank)
AAAUAGGCGGCUGAGAACUGGUCGGUGAUUUAGGUAGUUUCAUGUUGUUGGGGCUGGAGCUCUCUCUCUCUCUACAGCACGAAACUGCCCGAAUUACUUCAGUUUGUACUCAUCAAGCGGGUC
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Structure
        10            20        30        40         50        60
AAAUAGGCGGCUGAGAA----|   UC       UA         A      U-   GCUGGAG 
                     CUGG  GGUGAUU  GGUAGUUUC UGUUGU  GGG       C
                     GACU  UCAUUAA  CCGUCAAAG ACGACA  UCU       U
CUGGGCGAACUACUCAUGUUU^   --       GC         C      UC   CUCUCUC 
 120       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-196-P1_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Gja-Mir-196-P1_3p* (predicted)
mirBase accessionNone
Sequence 
41- CUACAGCACGAAACUGCCCGAA -63
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