| MirGeneDB ID | Lch-Mir-196-P1 |
|---|---|
| Family name | MIR-196 (all species) |
| Seed | AGGUAGU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-196-P3 Lch-Mir-196-P4 |
| Orthologues | Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH126711.1: 2060364-2060422 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AACUAACGUGGACUAAACUGAAGUGUGAUUUAGGUAGUUUCAUGUUGUUGGGGCUCCAAAUUUAUCUCUAUAACAAGAAACUGCCUGAAUUACUCCAGUUAAAAUCUUCACACGUCAGUGet precursor sequence |
| Structure | 10 20 30 40 50 AACUAACGUGGACUAAA----| AAGU A U GCUCCA CUG GUGAUUUAGGUAGUUUC UGUUGU GGG A GAC CAUUAAGUCCGUCAAAG ACAAUA UCU A UGACUGCACACUUCUAAAAUU^ CU-- A - CUAUUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-196-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
| Star sequence | Lch-Mir-196-P1_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CUAUAACAAGAAACUGCCUGAA -59
Get sequence
|
