MirGeneDB ID | Aca-Mir-196-P1 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-196a-1
|
Paralogues |
Aca-Mir-196-P3
Aca-Mir-196-P4
|
Orthologues |
Ami-Mir-196-P1
Bta-Mir-196-P1
Cfa-Mir-196-P1
Cin-Mir-196
Cli-Mir-196-P1
Cmi-Mir-196-P1
Cpi-Mir-196-P1
Cpo-Mir-196-P1
Dno-Mir-196-P1
Dre-Mir-196-P1a
Dre-Mir-196-P1b
Ete-Mir-196-P1
Gga-Mir-196-P1
Gja-Mir-196-P1
Gmo-Mir-196-P1a
Gmo-Mir-196-P1b
Hsa-Mir-196-P1
Lch-Mir-196-P1
Loc-Mir-196-P1
Mal-Mir-196-P1a
Mal-Mir-196-P1b
Mdo-Mir-196-P1
Mml-Mir-196-P1
Mmu-Mir-196-P1
Mun-Mir-196-P1
Oan-Mir-196-P1
Ocu-Mir-196-P1
Pbv-Mir-196-P1
Pma-Mir-196-o1
Rno-Mir-196-P1c
Rno-Mir-196-P1d
Sha-Mir-196-P1
Spt-Mir-196-P1
Sto-Mir-196-P1
Tgu-Mir-196-P1
Tni-Mir-196-P1a
Tni-Mir-196-P1b
Xla-Mir-196-P1e
Xla-Mir-196-P1f
Xtr-Mir-196-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (anoCar2) |
GL343275.1: 1429558-1429620 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGAGGAGUCUAAGAACUGGUCGGUGAUUUAGGUAGUUUCAUGUUGUUGGGGCUAUGGCUCUCUCUUUCUCGACAGCACGAAACUGCCUUCAUUACUUCAGUUUCUAAUCAUCACCCGGGUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUGAGGAGUCUAAGAA----| UC UU A GCUAUGGC
CUGG GGUGAU AGGUAGUUUC UGUUGUUGGG \
GACU UCAUUA UCCGUCAAAG ACGACAGCUC U
CUGGGCCCACUACUAAUCUUU^ -- CU C UUUCUCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Aca-Mir-196-P1_5p |
mirBase accession | MIMAT0021831 |
Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
Star sequence |
Aca-Mir-196-P1_3p* |
mirBase accession | None |
Sequence |
41- CGACAGCACGAAACUGCCUUCA -63
Get sequence
|