Mir-196-P1b

MirGeneDB ID

Dre-Mir-196-P1b

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-196d

Paralogues

Dre-Mir-196-P1a Dre-Mir-196-P3a Dre-Mir-196-P4a Dre-Mir-196-P4b

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cja-Mir-196-P1 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Eca-Mir-196-P1 Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1b Hsa-Mir-196-P1 Laf-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1b Mdo-Mir-196-P1 Mml-Mir-196-P1 Mmr-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Neu-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pab-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1b Xtr-Mir-196-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(danRer11)

chr16: 20913420-20913478 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAAGAAACAAAGACAACUGCUAAGUGAUUUAGGUAGUUUUAUGUUGUUGGGCUCUAUUUUAUAUCCCCGCAACACGAAACUGUCUUAAUUGCCUCGCAGUGAGAUUCAGCACAACAAG

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Structure

        10          20        30        40        50         
CCAAGAAACAAAGACAA--|   UAA UG   U  GU     UA      U   CUCUAU 
                   CUGC   G  AUU AG  AGUUU  UGUUGU GGG      \
                   GACG   C  UAA UC  UCAAA  ACAACG CCC      U
GAACAACACGACUUAGAGU^   CUC GU   U  UG     GC      C   UAUAUU 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-196-P1b_5p

mirBase accession

MIMAT0011313

Sequence

0- UAGGUAGUUUUAUGUUGUUGGG -22

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Proposed targets

TargetScanFish: dre-miR-196d

Star sequence

Dre-Mir-196-P1b_3p*

mirBase accession

None

Sequence

37- CCGCAACACGAAACUGUCUUAA -59

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