MirGeneDB ID | Dre-Mir-196-P4b |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-196c
|
Paralogues |
Dre-Mir-196-P1a
Dre-Mir-196-P1b
Dre-Mir-196-P3a
Dre-Mir-196-P4a
|
Orthologues |
Aca-Mir-196-P4
Ami-Mir-196-P4
Bta-Mir-196-P4
Cfa-Mir-196-P4
Cin-Mir-196
Cja-Mir-196-P4
Cli-Mir-196-P4
Cmi-Mir-196-P4
Cpi-Mir-196-P4
Cpo-Mir-196-P4
Dno-Mir-196-P4
Eca-Mir-196-P4
Ete-Mir-196-P4
Gga-Mir-196-P4
Gja-Mir-196-P4
Hsa-Mir-196-P4
Laf-Mir-196-P4
Lch-Mir-196-P4
Loc-Mir-196-P4
Mml-Mir-196-P4
Mmr-Mir-196-P4
Mmu-Mir-196-P4
Mun-Mir-196-P4
Neu-Mir-196-P4
Oan-Mir-196-P4
Ocu-Mir-196-P4
Pab-Mir-196-P4
Rno-Mir-196-P4
Sha-Mir-196-P4
Spt-Mir-196-P4
Tgu-Mir-196-P4
Xtr-Mir-196-P4
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Olfactores
|
Genome context (danRer11) |
chr11: 2190643-2190701 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGGAUAGCCCGUCCAGCUGAUGCGUGGUUUAGGUAGUUUGAUGUUGUUGGGGUUGACUUCCUGGCUCGACAACAAGAAACUGCCUUGAUUACGUCAGUUUGCCUUCAUCAAGGCCGUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGGAUAGCCCGUCCAG----| AU U GA GUUGAC
CUG GCGUGGUU AGGUAGUUU UGUUGUUGGG \
GAC UGCAUUAG UCCGUCAAA ACAACAGCUC U
UUGCCGGAACUACUUCCGUUU^ -- U GA GGUCCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Dre-Mir-196-P4b_5p |
mirBase accession | MIMAT0011298 |
Sequence |
0- UAGGUAGUUUGAUGUUGUUGGG -22
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-196c
|
Star sequence |
Dre-Mir-196-P4b_3p* |
mirBase accession | None |
Sequence |
37- CGACAACAAGAAACUGCCUUGA -59
Get sequence
|