MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-196-P4b

Family name MIR-196 (all species)
Seed AGGUAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-196c
Paralogues Dre-Mir-196-P1a  Dre-Mir-196-P1b  Dre-Mir-196-P3a  Dre-Mir-196-P4a 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Xtr-Mir-196-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)
chr11: 2190643-2190701 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGAUAGCCCGUCCAGCUGAUGCGUGGUUUAGGUAGUUUGAUGUUGUUGGGGUUGACUUCCUGGCUCGACAACAAGAAACUGCCUUGAUUACGUCAGUUUGCCUUCAUCAAGGCCGUU
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Structure
        10            20        30        40        50         
GUGGAUAGCCCGUCCAG----|  AU        U         GA          GUUGAC 
                     CUG  GCGUGGUU AGGUAGUUU  UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAA  ACAACAGCUC      U
UUGCCGGAACUACUUCCGUUU^  --        U         GA          GGUCCU 
       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-196-P4b_5p

mirBase accessionMIMAT0011298
Sequence
0- UAGGUAGUUUGAUGUUGUUGGG -22
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Proposed targets TargetScanFish: dre-miR-196c
Star sequence

Dre-Mir-196-P4b_3p*

mirBase accessionNone
Sequence
37- CGACAACAAGAAACUGCCUUGA -59
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