| MirGeneDB ID | Spt-Mir-196-P4 |
|---|---|
| Family name | MIR-196 (all species) |
| Seed | AGGUAGU |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-196-P1 Spt-Mir-196-P3 |
| Orthologues | Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01003896.1: 1321540-1321597 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCCGCCCUUCCACGCAGCUGAUCCGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGGCUUUUAACUCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUUUGUCUUCAUCAAGGGCAGGet precursor sequence |
| Structure | 10 20 30 40 50 UCCGCCCUUCCACGCAG----| UC U A AUUGG CUGA CGUGGUU AGGUAGUUUC UGUUGUUGGG C GACU GCAUUAA UCCGUCAAAG ACAACGGCUC U GACGGGAACUACUUCUGUUUU^ -- U A AAUUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-196-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGGA -23
Get sequence
|
| Star sequence | Spt-Mir-196-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- UCGGCAACAAGAAACUGCCUUAA -58
Get sequence
|
