MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-196-P4c-v1

Family name MIR-196 (all species)
Seed AGGUAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Xtr-Mir-196-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Olfactores
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 148332751-148332811 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAUCUUUGUAUCCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGCUUUUUCUUAACGCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUAGUCUUCAUCAAGUGCAAC
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Structure
        10            20        30        40        50          
UGCAUCUUUGUAUCCAG----|    CU      U          A        GGAUUGCUU 
                     CUGAU  GUGGUU AGGUAGUUUC UGUUGUUG         \
                     GACUG  CAUUAA UCCGUCAAAG ACAACGGC         U
CAACGUGAACUACUUCUGAUU^    --      U          A        GCAAUUCUU 
 .       110       100          90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-196-P4c-v1_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Xla-Mir-196-P4c-v1_3p*
mirBase accessionNone
Sequence 
39- CGGCAACAAGAAACUGCCUUAA -61
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