Mir-196-P4

MirGeneDB ID

Ami-Mir-196-P4

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-196-2

Paralogues

Ami-Mir-196-P1 Ami-Mir-196-P3

Orthologues

Aca-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017708254.1: 280066-280123 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CGCCCUUUUUCGUGCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGGCUUUUAGCUCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUAGUGUUCUUCGAGGGCAGC

Get precursor sequence

Structure

        10            20        30        40        50        
CGCCCUUUUUCGUGCAG----|    CU      U          A          AUUGG 
                     CUGAU  GUGGUU AGGUAGUUUC UGUUGUUGGG     C
                     GACUG  CAUUAA UCCGUCAAAG ACAACGGCUC     U
CGACGGGAGCUUCUUGUGAUU^    --      U          A          GAUUU 
      110       100          90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-196-P4_5p

mirBase accession

MIMAT0038215

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

Get sequence

Star sequence

Ami-Mir-196-P4_3p* (predicted)

mirBase accession

None

Sequence

36- CGGCAACAAGAAACUGCCUUAA -58

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