MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-196-1
Paralogues Ami-Mir-196-P1  Ami-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708231.1: 3471039-3471098 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCAAGAAUGAACUAGAACUGCUUUGUGAAUUAGGUAGUUUCAUGUUGUUGGGCUUUUAUUUUUAAACACAAGAACAUAAAACUACCUGAUUUACUCCAGUUAUUCUCCUCGAAAUUGUUU
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Structure
        10            20        30        40        50         
CCAAGAAUGAACUAGAA----|  CUUU                C     G   GGCUUUUA 
                     CUG    GUGAAUUAGGUAGUUU AUGUU UUG        U
                     GAC    CAUUUAGUCCAUCAAA UACAA AAC        U
UUUGUUAAAGCUCCUCUUAUU^  CU--                A     G   ACAAAUUU 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-196-P3_5p
mirBase accessionMIMAT0038215
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Ami-Mir-196-P3_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAAGAACAUAAAACUACCUGAU -60
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