MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-196-o3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-196-o1  Pma-Mir-196-o2 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) P. marinus
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046124.1: 733295-733353 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCCGUGACUACCGGCUGUCACGUGGUGUAGGUAGUAUCAUGUUGUUGGGUAUUUACAACAUCCUCGACAACGCGUCACUGCCUUCACCACGCCAGCCACAACCAGCACCACCAGCG
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Structure
        10            20        30        40        50         
UGUCCCGUGACUACCGG----|  UCA       U       AUCA          UAUUUA 
                     CUG   CGUGGUG AGGUAGU    UGUUGUUGGG      \
                     GAC   GCACCAC UCCGUCA    GCAACAGCUC      C
GCGACCACCACGACCAACACC^  C--       U       CUGC          CUACAA 
       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-196-o3_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUAUCAUGUUGUUGGG -22
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Star sequence

Pma-Mir-196-o3_3p* (predicted)
mirBase accessionNone
Sequence 
37- CGACAACGCGUCACUGCCUUCA -59
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