Mir-196-o3

MirGeneDB ID

Pma-Mir-196-o3

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-196-o1 Pma-Mir-196-o2

Orthologues

Aca-Mir-196-P3 Ami-Mir-196-P3 Bta-Mir-196-P3 Cfa-Mir-196-P3 Cin-Mir-196 Cli-Mir-196-P3 Cmi-Mir-196-P3 Cpi-Mir-196-P3 Cpo-Mir-196-P3 Dno-Mir-196-P3 Dre-Mir-196-P3a Gga-Mir-196-P3 Gja-Mir-196-P3 Hsa-Mir-196-P3 Lch-Mir-196-P3 Loc-Mir-196-P3 Mal-Mir-196-P3a Mdo-Mir-196-P3 Mml-Mir-196-P3 Mmu-Mir-196-P3 Ocu-Mir-196-P3 Pbv-Mir-196-P3 Rno-Mir-196-P3 Sha-Mir-196-P3 Spt-Mir-196-P3 Sto-Mir-196-P3 Tni-Mir-196-P3a

Node of Origin (locus)

P. marinus

Node of Origin (family)

Olfactores

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046124.1: 733295-733353 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUCCCGUGACUACCGGCUGUCACGUGGUGUAGGUAGUAUCAUGUUGUUGGGUAUUUACAACAUCCUCGACAACGCGUCACUGCCUUCACCACGCCAGCCACAACCAGCACCACCAGCG

Get precursor sequence

Structure

        10            20        30        40        50         
UGUCCCGUGACUACCGG----|  UCA       U       AUCA          UAUUUA 
                     CUG   CGUGGUG AGGUAGU    UGUUGUUGGG      \
                     GAC   GCACCAC UCCGUCA    GCAACAGCUC      C
GCGACCACCACGACCAACACC^  C--       U       CUGC          CUACAA 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-196-o3_5p

mirBase accession

None

Sequence

0- UAGGUAGUAUCAUGUUGUUGGG -22

Get sequence

Star sequence

Pma-Mir-196-o3_3p* (predicted)

mirBase accession

None

Sequence

37- CGACAACGCGUCACUGCCUUCA -59

Get sequence