MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-196-P3a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-196b
Paralogues Tni-Mir-196-P1a  Tni-Mir-196-P1b  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Ocu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 5576389-5576449 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAGCCGCUCUUUUUGGAGCGGUGUGAUGUAGGUAGUUUCAAGUUGUUGGGCUAAACUUUGGUGAUCACAGGAACCUGAAACUGCCCGAUUCACGCUGACCUCCACUGCACAUCUGCGCA
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Structure
        10          20        30        40        50          
UUCAGCCGCUCUUUUUG-- AG        UGUA          A   G   -| CUAAAC 
                   G  CGGUGUGA    GGUAGUUUCA GUU UUG GG      U
                   C  GUCGCACU    CCGUCAAAGU CAA GAC CU      U
ACGCGUCUACACGUCACCU CA        UAGC          C   G   A^ AGUGGU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-196-P3a_5p
mirBase accessionMIMAT0003034
Sequence 
0- UAGGUAGUUUCAAGUUGUUGGGC -23
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Co-mature sequence

Tni-Mir-196-P3a_3p
mirBase accessionNone
Sequence 
38- ACAGGAACCUGAAACUGCCCGAU -61
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