MirGeneDB ID | Tni-Mir-196-P3a |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-196b
|
Paralogues |
Tni-Mir-196-P1a
Tni-Mir-196-P1b
Tni-Mir-196-P4a1
Tni-Mir-196-P4a2
Tni-Mir-196-P4a3
|
Orthologues |
Aca-Mir-196-P3
Ami-Mir-196-P3
Bta-Mir-196-P3
Cfa-Mir-196-P3
Cin-Mir-196
Cja-Mir-196-P3
Cli-Mir-196-P3
Cmi-Mir-196-P3
Cpi-Mir-196-P3
Cpo-Mir-196-P3
Dno-Mir-196-P3
Dre-Mir-196-P3a
Eca-Mir-196-P3
Gga-Mir-196-P3
Gja-Mir-196-P3
Hsa-Mir-196-P3
Laf-Mir-196-P3
Lch-Mir-196-P3
Loc-Mir-196-P3
Mal-Mir-196-P3a
Mdo-Mir-196-P3
Mml-Mir-196-P3
Mmr-Mir-196-P3
Mmu-Mir-196-P3
Neu-Mir-196-P3
Ocu-Mir-196-P3
Pab-Mir-196-P3
Pbv-Mir-196-P3
Pma-Mir-196-o3
Rno-Mir-196-P3
Sha-Mir-196-P3
Spt-Mir-196-P3
Sto-Mir-196-P3
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Olfactores
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 5576389-5576449 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCAGCCGCUCUUUUUGGAGCGGUGUGAUGUAGGUAGUUUCAAGUUGUUGGGCUAAACUUUGGUGAUCACAGGAACCUGAAACUGCCCGAUUCACGCUGACCUCCACUGCACAUCUGCGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCAGCCGCUCUUUUUG-- AG UGUA A G -| CUAAAC
G CGGUGUGA GGUAGUUUCA GUU UUG GG U
C GUCGCACU CCGUCAAAGU CAA GAC CU U
ACGCGUCUACACGUCACCU CA UAGC C G A^ AGUGGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-196-P3a_5p |
mirBase accession | MIMAT0003034 |
Sequence |
0- UAGGUAGUUUCAAGUUGUUGGGC -23
Get sequence
|
Co-mature sequence |
Tni-Mir-196-P3a_3p |
mirBase accession | None |
Sequence |
38- ACAGGAACCUGAAACUGCCCGAU -61
Get sequence
|