MirGeneDB ID | Mmr-Mir-196-P3 |
Family name |
MIR-196 (all species) |
Seed |
AGGUAGU |
Species |
Gray mouse lemur (Microcebus murinus) |
MiRBase ID |
|
Paralogues |
Mmr-Mir-196-P1
Mmr-Mir-196-P4
|
Orthologues |
Aca-Mir-196-P3
Ami-Mir-196-P3
Bta-Mir-196-P3
Cfa-Mir-196-P3
Cin-Mir-196
Cja-Mir-196-P3
Cli-Mir-196-P3
Cmi-Mir-196-P3
Cpi-Mir-196-P3
Cpo-Mir-196-P3
Dno-Mir-196-P3
Dre-Mir-196-P3a
Eca-Mir-196-P3
Gga-Mir-196-P3
Gja-Mir-196-P3
Hsa-Mir-196-P3
Laf-Mir-196-P3
Lch-Mir-196-P3
Loc-Mir-196-P3
Mal-Mir-196-P3a
Mdo-Mir-196-P3
Mml-Mir-196-P3
Mmu-Mir-196-P3
Neu-Mir-196-P3
Ocu-Mir-196-P3
Pab-Mir-196-P3
Pbv-Mir-196-P3
Pma-Mir-196-o3
Rno-Mir-196-P3
Sha-Mir-196-P3
Spt-Mir-196-P3
Sto-Mir-196-P3
Tni-Mir-196-P3a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_000165445.3_Mmur_3.0_genomic) |
CM007676.1: 26366250-26366309 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGAGCUUGACCCGGAACUGCUGAGUGAAUUAGGUAGUUUCAUGUUGUUGGGCCUGGGUUUCUGAACACAACAACAUCGAACCACCCGAUCCACUGCAGUUACUGCUCCUCGCUUAGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGAGCUUGACCCGGAA----| UG A UA A C GGCCUGGG
CUGC AGUG AU GGU GUUU AUGUUGUUG U
GACG UCAC UA CCA CAAG UACAACAAC U
GUCGAUUCGCUCCUCGUCAUU^ -- C GC C C ACAAGUCU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mmr-Mir-196-P3_5p |
mirBase accession | None |
Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
Star sequence |
Mmr-Mir-196-P3_3p* |
mirBase accession | None |
Sequence |
38- CAACAACAUCGAACCACCCGAU -60
Get sequence
|