MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-196-P1  Lch-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmu-Mir-196-P3  Ocu-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)
JH126617.1: 1196138-1196196 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCGGACGGACAAAAACUGCGGUGUGUUUUAGGUAGUUUCAUGUUGUUGGGCUUUUUUUUUAAUCACAGGAACAUCAAACUGCCUGAAUUACUCCAGUUACCCGCCUUCAGUUCUGUG
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Structure
        10        20          30        40        50         
CCGCGGACGGACAAAAACUGC--  U   U            C     G   -| CUUUU 
                       GG GUG UUUAGGUAGUUU AUGUU UUG GG     U
                       CC CAU AAGUCCGUCAAA UACAA GAC CU     U
GUGUCUUGACUUCCGCCCAUUGA  U   U            C     G   A^ AAUUU 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-196-P3_5p (predicted)

mirBase accessionNone
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Lch-Mir-196-P3_3p* (predicted)

mirBase accessionNone
Sequence
37- CAGGAACAUCAAACUGCCUGAA -59
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